Job DetailsThe RGCs Genome Informatics team is looking for a Software Engineer to assist the design, implementation, testing and deployment of the methods that support the production and R&D systems. Genome Informatics leads the primary and secondary analysis of more than 500,000 samples a year, including production pipelines, cloud computing infrastructure, and sequencing and variant quality control. Working closely with other RGC teams, our extensive multi-omics production system supports the creation and analysis of the worlds largest sequencing projects, including proteomics studies (UK Biobank Proteomics) and DNA Sequence-Linked healthcare databases (Truveta Genome Project). Through diverse and unique production pipelines (DNA, Olink) on latest state-of-the-art sequencing platforms (Illumina, Ultima), we enable diverse multi-omics applications, unprecedented-scale variant calling, disease association studies, and loci-specific analyses that directly impact cutting-edge drug development. The candidate will work under the direction of the genomic data engineering lead and will support our software engineering efforts to develop, implement and deploy at-speed and at-scale multi-omics solutions for both production and R&D experiments.
In this role, a typical day might include the following:- Support software engineering efforts in GI to ensure 24/7 uptime and rapid development cycle of production
- Develop, implement, and troubleshoot Python and Bash software solutions in a cloud environment (AWS, GCP)
- Develop, maintain and document pipelines for sequencing data from diverse assay types (DNA, Olink) and platforms (Illumina, Ultima)
- Develop tools and methods to enable the analysis of large-scale datasets
- Develop applications for routine monitoring and logging of RGC production
- Apply software engineering best practices (SDLC) using version control and CI/CD pipelines
- Work with GI engineering lead to continuously optimize and improve the productionisation process
This job might be for you if:- You have an interest in the health & life-sciences data domain.
- You have a passion to bring state-of-the-art technologies in the field.
- You are detail-oriented and focus on the quality of the final product.
- You enjoy collaborating with multiple cross-functional teams of scientists, analysts, and engineers.
- With your sleeves rolled up, you work on current problems while thinking of future solutions.
To be considered for this role you must have a B.S. in Computer Science or a related field with 1-2 years of relevant experience. Strong knowledge in Python and Bash and experience with Linux operating system (Ubuntu). Solid understanding of software engineering principles and best practices (SDLC), including version control (Git) and CI/CD. The candidate should have experience working with databases (SQL) and in a cloud environment (AWS or GCP). Experience with Big Data analytics tools and formats (e.g., Spark, Kubernetes, Parquet) is a plus. Experience with standard bioinformatics tools (e.g., Samtools, BCFtools, VCFtools, BWA, GATK, Picard, BEDtools, PLINK) is preferred.
Please note: This is an onsite role based out of our Tarrytown, NY office. Does this sound like you? Apply now to take your first step towards living the Regeneron Way! We have an inclusive and diverse culture that provides comprehensive benefits, which often include (depending on location) health and wellness programs, fitness centers, equity awards, annual bonuses, and paid time off for eligible employees at all levels!
Regeneron is an equal opportunity employer and all qualified applicants will receive consideration for employment without regard to race, color, religion or belief (or lack thereof), sex, nationality, national or ethnic origin, civil status, age, citizenship status, membership of the Traveler community, sexual orientation, disability, genetic information, familial status, marital or registered civil partnership status, pregnancy or parental status, gender identity, gender reassignment, military or veteran status, or any other protected characteristic in accordance with applicable laws and regulations. The Company will also provide reasonable accommodation to the known disabilities or chronic illnesses of an otherwise qualified applicant for employment, unless the accommodation would impose undue hardship on the operation of the Company's business.
For roles in which the hired candidate will be working in the U.S., the salary ranges provided are shown in accordance with U.S. law and apply to U.S.-based positions. For roles which will be based in Japan and/or Canada, the salary ranges are shown in accordance with the applicable local law and currency. If you are outside the U.S, Japan or Canada, please speak with your recruiter about salaries and benefits in your location.
Please note that certain background checks will form part of the recruitment process. Background checks will be conducted in accordance with the law of the country where the position is based, including the type of background checks conducted. The purpose of carrying out such checks is for Regeneron to verify certain information regarding a candidate prior to the commencement of employment such as identity, right to work, educational qualifications etc.
Salary Range (annually)$79,100.00 - $129,100.00
